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2023

  • Comprehensive Survey of Conserved RNA Secondary Structures in Full-Genome Alignment of Hepatitis C Virus
    Triebel S, Lamkiewicz K, Ontiveros N, Sweeney B, Stadler PF, Petrov AI, Niepmann M, Marz M
    bioRxiv 2023, 10.1101/2023.11.15.567179
  • De novo genome assembly resolving repetitive structures enables genomic analysis of 35 European Mycoplasmopsis bovis strains.
    Triebel S, Sachse K, Weber M, Heller M, Diezel C, Hölzer M, Schnee C, Marz M
    BMC Genomics 2023, 24(1), 548
  • De novo genome assembly resolving repetitive structures enables genomic analysis of 35 European Mycoplasma bovis strains
    Triebel S, Sachse K, Weber M, Heller M, Diezel C, Hölzer M, Schnee C, Marz M
    bioRxiv 2023, https://doi.org/10.1101/2023.04.
  • Immunoproteasome function maintains oncogenic gene expression in KMT2A-complex driven leukemia.
    Tubío-Santamaría N, Jayavelu AK, Schnoeder TM, Eifert T, Hsu CJ, Perner F, Zhang Q, Wenge DV, Hansen FM, Kirkpatrick JM, Jyotsana N, Lane SW, von Eyss B, Deshpande AJ, Kühn MWM, Schwaller J, Cammann C, Seifert U, Ebstein F, Krüger E, Hochhaus A, Heuser M, Ori A, Mann M, Armstrong SA, Heidel FH
    Mol Cancer 2023, 22(1), 196
  • Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision.
    Vromman M, Anckaert J, Bortoluzzi S, Buratin A, Chen CY, Chu Q, Chuang TJ, Dehghannasiri R, Dieterich C, Dong X, Flicek P, Gaffo E, Gu W, He C, Hoffmann S, Izuogu O, Jackson MS, Jakobi T, Lai EC, Nuytens J, Salzman J, Santibanez-Koref M, Stadler P, Thas O, Vanden Eynde E, Verniers K, Wen G, Westholm J, Yang L, Ye CY, Yigit N, Yuan GH, Zhang J, Zhao F, Vandesompele J, Volders PJ
    Nat Methods 2023, 20(8), 1159-69
  • Signalling by senescent melanocytes hyperactivates hair growth.
    Wang X, Ramos R, Phan AQ, Yamaga K, Flesher JL, Jiang S, Oh JW, Jin S, Jahid S, Kuan CH, Nguyen TK, Liang HY, Shettigar NU, Hou R, Tran KH, Nguyen A, Vu KN, Phung JL, Ingal JP, Levitt KM, Cao X, Liu Y, Deng Z, Taguchi N, Scarfone VM, Wang G, Paolilli KN, Wang X, Guerrero-Juarez CF, Davis RT, Greenberg EN, Ruiz-Vega R, Vasudeva P, Murad R, Widyastuti LHP, Lee HL, McElwee KJ, Gadeau AP, Lawson DA, Andersen B, Mortazavi A, Yu Z, Nie Q, Kunisada T, Karin M, Tuckermann J, Esko JD, Ganesan AK, Li J, Plikus MV
    Nature 2023, 618(7966), 808-17
  • A protocol for the use of cloud-based quantum computers for logical network analysis of biological systems.
    Weidner FM, Rossini M, Ankerhold J, Kestler HA
    STAR Protoc 2023, 4(3), 102438
  • Leveraging quantum computing for dynamic analyses of logical networks in systems biology.
    Weidner FM, Schwab JD, Wölk S, Rupprecht F, Ikonomi N, Werle SD, Hoffmann S, Kühl M, Kestler HA
    PATTERNS 2023, 4(3), 100705
  • Resident and recruited macrophages differentially contribute to cardiac healing after myocardial ischemia
    Weinberger T, Messerer D, Joppich M, Fischer M, Garcia C, Kumaraswami K, Wimmler V, Ablinger S, Räuber S, Fang J, Liu L, Han Liu W, Winterhalter J, Lichti J, Tomas L, Esfandyari D, Percin G, Martin Salamanca S, Hidalgo A, Waskow C, Engelhardt S, Todica A, Zimmer R, Pridans C, Gomez-Perdiguero E, Schulz C
    bioRxiv 2023, 10.1101/2023.05.08.539799
  • Light and prey influence the abundances of two rhodopsins in the dinoflagellate Oxyrrhis marina.
    Westermann M, Hoischen C, Wöhlbrand L, Rabus R, Rhiel E
    Protoplasma 2023, 260(2), 529-44