Publications

2012

• Coevolution of aah: a dps-like gene with the host bacterium revealed by comparative genomic analysis.
  Ping L, Platzer M, Wen G, Delaroque N
  SCI WORLD J 2012, 2012, 504905
  
• The nuclear envelope protein Nesprin-2 has roles in cell proliferation and differentiation during wound healing.
  Rashmi RN, Eckes B, Glöckner G, Groth M, Neumann S, Gloy J, Sellin L, Walz G, Schneider M, Karakesisoglou I, Eichinger L, Noegel AA
  Nucleus 2012, 3(2), 172-86
  
• Functional implications of novel human acid sphingomyelinase splice variants.
  Rhein C, Tripal P, Seebahn A, Konrad A, Kramer M, Nagel C, Kemper J, Bode J, Mühle C, Gulbins E, Reichel M, Becker CM, Kornhuber J
  PLoS One 2012, 7(4), e35467
  
• Gene polymorphisms in the heme degradation pathway and outcome of severe human sepsis.
  Sponholz C, Huse K, Kramer M, Giamarellos-Bourboulis EJ, Claus RA, Kern A, Engel C, Kuhnt E, Kiehntopf M, Routsi C, Mylona V, Tsangaris I, Heinemann SH, Reinhart K, Platzer M, Bauer M
  Shock 2012, 38(5), 459-65
  
• Methylierungsanalyse des humanen Fettleibigkeitkandidatengens MCHR1
  Stepanow S
  Dissertation 2012, Jena, Germany
  
• Association studies of the copy-number variable ß-defensin cluster on 8p23.1 in adenocarcinoma and chronic pancreatitis.
  Taudien* S, Gäbel* G, Kuss* O, Groth M, Grützmann R, Huse K, Kluttig A, Wolf A, Nothnagel M, Rosenstiel P, Greiser KH, Werdan K, Krawczak M, Pilarsky C, Platzer M
  BMC Res Notes 2012, 5, 629 * equal contribution
  
• A physical, genetic and functional sequence assembly of the barley genome.
  The International Barley Genome Sequencing Consortium, Principal investigators, Mayer KFX, Waugh R, Langridge P, Close TJ, Wise RP, Graner A, Matsumoto T, Sato K, Schulman A, Muehlbauer GJ, Stein N, Physical map construction and direct anchoring, Ariyadasa R, Schulte D, Poursarebani N, Zhou R, Steuernagel B, Mascher M, Scholz U, Shi B, Langridge P, Madishetty K, Svensson JT, Bhat P, Moscou M, Resnik J, Close TJ, Muehlbauer GJ, Hedley P, Liu H, Morris J, Waugh R, Frenkel Z, Korol A, Bergès H, Graner A, Stein N, Genomic sequencing and assembly, Steuernagel B, Scholz U, Taudien S, Felder M, Groth M, Platzer M, Stein N, BAC sequencing and assembly, Steuernagel B, Scholz U, Himmelbach A, Taudien S, Felder M, Platzer M, Lonardi S, Duma D, Alpert M, Cordero F, Beccuti M, Ciardo G, Ma Y, Wanamaker S, Close TJ, Stein N, BAC-end sequencing, Cattonaro F, Vendramin V, Scalabrin S, Radovic S, Wing R, Schulte D, Steuernagel B, Morgante M, Stein N, Waugh R, Integration of physical/genetic map and sequence resources, Nussbaumer T, Gundlach H, Martis M, Ariyadasa R, Poursarebani N, Steuernagel B, Scholz U, Wise RP, Poland J, Stein N, Mayer KFX, Gene annotation, Spannagl M, Pfeifer M, Gundlach H, Mayer KFX, Repetitive DNA analysis, Gundlach H, Moisy C, Tanskanen J, Scalabrin S, Zuccolo A, Vendramin V, Morgante M, Mayer KFX, Schulman A, Transcriptome sequencing and analysis, Pfeifer M, Spannagl M, Hedley P, Morris J, Russell J, Druka A, Marshall D, Bayer M, Swarbreck D, Sampath D, Ayling S, Febrer M, Caccamo M, Matsumoto T, Tanaka T, Sato K, Wise RP, Close TJ, Wannamaker S, Muehlbauer GJ, Stein N, Mayer KFX, Waugh R, Re-sequencing and diversity analysis, Steuernagel B, Schmutzer T, Mascher M, Scholz U, Taudien S, Platzer M, Sato K, Marshall D, Bayer M, Waugh R, Stein N, Writing and editing of the manuscript, Mayer KFX, Waugh R, Brown JWS, Schulman A, Langridge P, Platzer M, Fincher GB, Muehlbauer GJ, Sato K, Close TJ, Wise RP, Stein N
  Nature 2012, 491(7426), 711-16
  
• Nothobranchius niassa (Cyprinodontiformes: Nothobranchiidae), a new species of annual killifish from northern Mozambique
  Valdesalici S, Bills R, Dorn A, Reichwald K, Cellerino A
  Ichthyol Explor Fres 2012, 23(1), 19-28
  
• Comparative evaluation of establishing a human gut microbial community within rodent models.
  Wos-Oxley M, Bleich A, Oxley APA, Kahl S, Janus L, Smoczek A, Nahrstedt H, Pils M, Taudien S, Platzer M, Hedrich HJ, Medina E, Pieper D
  Gut Microbes 2012, 3(3), 234-49
  
• Impaired Insulin/IGF1 Signaling Extends Life Span by Promoting Mitochondrial L-Proline Catabolism to Induce a Transient ROS Signal.
  Zarse K, Schmeisser S, Groth M, Priebe S, Beuster G, Kuhlow D, Guthke R, Platzer M, Kahn CR, Ristow M
  Cell Metab 2012, 15(4), 451-65
  
• Sequencing of 21 varicella-zoster virus genomes reveals two novel genotypes and evidence of recombination.
  Zell R, Taudien S, Pfaff F, Wutzler P, Platzer M, Sauerbrei A
  J Virol 2012, 86(3), 1608-22
  

2011

• Comparative and functional genomics provide insights into the pathogenicity of dermatophytic fungi.
  Burmester* A, Shelest* E, Glöckner* G, Heddergott* C, Schindler S, Staib P, Heidel A, Felder M, Petzold A, Szafranski K, Feuermann M, Pedruzzi I, Priebe S, Groth M, Winkler R, Li W, Kniemeyer O, Schroeckh V, Hertweck C, Hube B, White TC, Platzer M, Guthke R, Heitman J, Wöstemeyer J, Zipfel PF, Monod M, Brakhage AA
  Genome Biol 2011, 12(1), R7 * equal contribution
  
• Phylogeny, genetic variability and colour polymorphism of an emerging animal model: The short-lived annual Nothobranchius fishes from southern Mozambique.
  Dorn A, Ng'oma E, Janko K, Reichwald K, Polačik M, Platzer M, Cellerino* A, Reichard* M
  Mol Phylogenet Evol 2011, 61(3), 739-49 * equal contribution
  
• Mapping genetic determinants of lifespan in the short-lived fish Nothobranchius furzeri - a novel model for age research
  Haink J
  Dissertation 2011, Jena, Germany
  
• Mitochondrial DNA copy number and function decrease with age in the short-lived fish Nothobranchius furzeri.
  Hartmann N, Reichwald K, Wittig I, Dröse S, Schmeisser S, Lück C, Hahn C, Graf M, Gausmann U, Terzibasi E, Cellerino A, Ristow M, Brandt U, Platzer M, Englert C
  Aging Cell 2011, 10(5), 824-31
  
• From RNA-seq to large-scale genotyping - genomics resources for rye (Secale cereale L.).
  Haseneyer G, Schmutzer T, Seidel M, Zhou R, Mascher M, Schön CC, Taudien S, Scholz U, Stein N, Mayer KF, Bauer E
  BMC Plant Biol 2011, 11, 131
  
• Phylogeny-wide analysis of social amoeba genomes highlights ancient origins for complex intercellular communication.
  Heidel AJ, Lawal HM, Felder M, Schilde C, Helps NR, Tunggal B, Rivero F, John U, Schleicher M, Eichinger L, Platzer M, Noegel AA, Schaap P, Glöckner G
  Genome Res 2011, 21(11), 1882-91
  
• Pipeline for large-scale microdroplet bisulfite PCR-based sequencing allows the tracking of hepitype evolution in tumors.
  Herrmann A, Haake A, Ammerpohl O, Martin-Guerrero I, Szafranski K, Stemshorn K, Nothnagel M, Kotsopoulos SK, Richter J, Warner J, Olson J, Link DR, Schreiber S, Krawczak M, Platzer M, Nürnberg P, Siebert R, Hampe J
  PLoS One 2011, 6(7), e21332
  
• The ITS1-5.8S-ITS2 sequence region in the Musaceae: structure, diversity and use in molecular phylogeny.
  Hřibová E, Čížková J, Christelová P, Taudien S, de Langhe E, Doležel J
  PLoS One 2011, 6(3), e17863
  
• Creation and Comparison of Different Chip Definition Files for Affymetrix Microarrays.
  Hummert C, Mech F, Horn F, Weber M, Dryndab S, Gausmann U, Guthke R
  In: Proceedings of the International Conference on Bioinformatics and Computational Biology, BIOCOMP '11, July 12-15, 2011, Las Vegas, USA (edited by Arabnia HR, Tran QN) 2011, 1(BIC3102), 16-22, CSREA Press, Las Vegas