Publications

2010

• Transcriptomic changes arising during light-induced sporulation in Physarum polycephalum.
  Barrantes I, Glockner G, Meyer S, Marwan W
  BMC Genomics 2010, 11, 115
  
• Posttranslational modification of human glyoxalase 1 indicates redox-dependent regulation.
  Birkenmeier G, Stegemann C, Hoffmann R, Günther R, Huse K, Birkemeyer C
  PLoS One 2010, 5(4), e10399
  
• Both copy number and sequence variations affect expression of human DEFB4.
  Groth M, Wiegand C, Szafranski K, Huse K, Kramer M, Rosenstiel P, Schreiber S, Norgauer J, Platzer M
  Genes Immun 2010, 11(6), 458-66
  
• A label-free assay of exonuclease activity using a pyrosequencing technique.
  Gührs KH, Groth M, Grosse F
  Anal Biochem 2010, 405(1), 11-8
  
• Linking chemical and microbial diversity in marine sponges: possible role for poribacteria as producers of methyl-branched fatty acids.
  Hochmuth T, Niederkrüger H, Gernert C, Siegl A, Taudien S, Platzer M, Crews P, Hentschel U, Piel J
  Chembiochem 2010, 11(18), 2572-8
  
• Genomic characterisation of the ichthyotoxic prymnesiophyte Chrysochromulina polylepis, and the expression of polyketide synthase genes in synchronized cultures.
  John U, Beszteri S, Glöckner G, Singh R, Medlin L, Cembella AD
  Eur J Phycol 2010, 45(3), 215-29 published during change of institution
  
• Theoretical study of lipid biosynthesis in wild-type Escherichia coli and in a protoplast-type L-form using elementary flux mode analysis.
  Kenanov D, Kaleta C, Petzold A, Hoischen C, Diekmann S, Siddiqui RA, Schuster S
  FEBS J 2010, 277(4), 1023-34
  
• NOD2-C2 - a novel NOD2 isoform activating NF-kappaB in a muramyl dipeptide-independent manner.
  Kramer M, Boeck J, Reichenbach D, Kaether C, Schreiber S, Platzer M, Rosenstiel* P, Huse* K
  BMC Res Notes 2010, 3, 224 * equal contribution
  
• Analysis of relative gene dosage and expression differences of the paralogs RABL2A and RABL2B by Pyrosequencing.
  Kramer* M, Backhaus* O, Rosenstiel P, Horn D, Klopocki E, Birkenmeier G, Schreiber S, Platzer M, Hampe J, Huse K
  Gene 2010, 455(1-2), 1-7 * equal contribution
  
• Cervimycin C resistance in Bacillus subtilis is due to a promoter up-mutation and increased mRNA stability of the constitutive ABC-transporter gene bmrA.
  Krügel H, Licht A, Biedermann G, Petzold A, Lassak J, Hupfer Y, Schlott B, Hertweck C, Platzer M, Brantl S, Saluz HP
  FEMS Microbiol Lett 2010, 313(2), 155-63
  
• Alpha2-macroglobulin inhibits the malignant properties of astrocytoma cells by impeding beta-catenin signaling.
  Lindner I, Hemdan NYA, Buchold M, Huse K, Bigl M, Oerlecke I, Ricken A, Gaunitz F, Sack U, Naumann A, Hollborn M, Thal D, Gebhardt R, Birkenmeier G
  Cancer Res 2010, 70(1), 277-87
  
• The origins of eukaryotic-like proteins in Legionella pneumophila.
  Lurie-Weinberger MN, Gomez-Valero L, Merault N, Glöckner G, Buchrieser C, Gophna U
  Int J Med Microbiol 2010, 300(7), 470-81
  
• The unique complexity of the CYP3A4 upstream region suggests a nongenetic explanation of its expression variability.
  Qiu H, Mathäs M, Nestler S, Bengel C, Nem D, Gödtel-Armbrust U, Lang T, Taudien S, Burk O, Wojnowski L
  Pharmacogenet Genomics 2010, 20(3), 167-78
  
• Molecular analysis of cataract families in India: new mutations in the CRYBB2 and GJA3 genes and rare polymorphisms.
  Santhiya ST, Kumar GS, Sudhakar P, Gupta N, Klopp N, Illig T, Söker T, Groth M, Platzer M, Gopinath PM, Graw J
  Mol Vis 2010, 16, 1837-47
  
• A subtle alternative splicing event of the Na(V)1.8 voltage-gated sodium channel is conserved in human, rat, and mouse.
  Schirmeyer J, Szafranski K, Leipold E, Mawrin C, Platzer M, Heinemann SH
  J Mol Neurosci 2010, 41(2), 310-4
  
• A cytohesin homolog in Dictyostelium amoebae.
  Shina MC, Müller R, Blau-Wasser R, Glöckner G, Schleicher M, Eichinger L, Noegel AA, Kolanus W
  PLoS One 2010, 5(2), e9378
  
• Bioinformatics analyses of alternative splicing : predition of alternative splicing events in animals and plants using machine learning and analysis of the extent and conservation of subtle alternative splicing
  Sinha R
  Dissertation 2010, Jena, Germany
  
• TassDB2 - TAndem Splice Site DataBase.
  Sinha R, Lenser T, Jahn N, Gausmann U, Friedel S, Szafranski K, Huse K, Rosenstiel P, Hampe J, Schuster S, Hiller M, Backofen R, Platzer M
  2010, URL http://gen100.imb-jena.de/Ta
  
• TassDB2 - A comprehensive database of subtle alternative splicing events.
  Sinha R, Lenser T, Jahn N, Gausmann U, Friedel S, Szafranski K, Huse K, Rosenstiel P, Hampe J, Schuster S, Hiller M, Backofen R, Platzer M
  BMC Bioinformatics 2010, 11, 216
  
• Identification and characterization of NAGNAG alternative splicing in the moss Physcomitrella patens.
  Sinha R, Zimmer AD, Bolte K, Lang D, Reski R, Platzer M, Rensing SA, Backofen R
  BMC Plant Biol 2010, 10, 76