Publications

2011

• Creation and Comparison of Different Chip Definition Files for Affymetrix Microarrays.
  Hummert C, Mech F, Horn F, Weber M, Dryndab S, Gausmann U, Guthke R
  In: Proceedings of the International Conference on Bioinformatics and Computational Biology, BIOCOMP '11, July 12-15, 2011, Las Vegas, USA (edited by Arabnia HR, Tran QN) 2011, 1(BIC3102), 16-22, CSREA Press, Las Vegas
  
• Polymorphisms in the 3'-untranslated region of the CDH1 gene are a risk factor for primary gastric diffuse large B-cell lymphoma.
  Jacobs G, Hellmig S, Huse K, Titz A, Franke A, Kwiatkowski R, Ott S, Kosmahl M, Fischbach W, Lucius R, Klapper W, Fölsch UR, Hampe J, Schreiber S, Rosenstiel P
  Haematologica 2011, 96(7), 987-95
  
• Host plant shifts affect a major defense enzyme in Chrysomela lapponica.
  Kirsch R, Vogel H, Muck A, Reichwald K, Pasteels JM, Boland W
  Proc Natl Acad Sci U S A 2011, 108(12), 4897-901
  
• Untersuchungen zum Einfluss genetischer Variationen auf die Genexpression
  Kramer M
  Dissertation 2011, Leipzig, Germany
  
• Constant splice-isoform ratios in human lymphoblastoid cells support the concept of a splico-stat.
  Kramer M, Huse K, Menzel U, Backhaus O, Rosenstiel P, Schreiber S, Hampe J, Platzer M
  Genetics 2011, 187(3), 761-70
  
• Highly parallel gene-to-BAC addressing using microarrays.
  Liu H, McNicol J, Bayer M, Morris JA, Cardle L, Marshall DF, Schulte D, Stein N, Shi BJ, Taudien S, Waugh R, Hedley PE
  Biotechniques 2011, 50(3), 165-74
  
• Unlocking the barley genome by chromosomal and comparative genomics.
  Mayer KFX, Martis M, Hedley PE, Simková H, Liu H, Morris JA, Steuernagel B, Taudien S, Roessner S, Gundlach H, Kubaláková M, Suchánková P, Murat F, Felder M, Nussbaumer T, Graner A, Salse J, Endo T, Sakai H, Tanaka T, Itoh T, Sato K, Platzer M, Matsumoto T, Scholz U, Dolezel J, Waugh R, Stein N
  Plant Cell 2011, 23(4), 1249-63
  
• Technology-specific error signatures in the 1000 Genomes Project data.
  Nothnagel M, Herrmann A, Wolf A, Schreiber S, Platzer M, Siebert R, Krawczak M, Hampe J
  Hum Genet 2011, 130(4), 505-16
  
• Statistical inference of allelic imbalance from transcriptome data.
  Nothnagel M, Wolf A, Herrmann A, Szafranski K, Vater I, Brosch M, Huse K, Siebert R, Platzer M, Hampe J, Krawczak M
  Hum Mutat 2011, 32(1), 98-106
  
• Endosymbiotic gene transfer and transcriptional regulation of transferred genes in Paulinella chromatophora.
  Nowack ECM, Vogel H, Groth M, Grossman AR, Melkonian** M, Glöckner** G
  Mol Biol Evol 2011, 28(1), 407-22 ** co-senior authors
  
• A major invasion of transposable elements accounts for the large size of the Blumeria graminis f.sp. tritici genome.
  Parlange F, Oberhaensli S, Breen J, Platzer M, Taudien S, Simková H, Wicker T, Doležel J, Keller B
  Funct Integr Genomics 2011, 11(4), 671-7
  
• Der annuelle Türkise Prachtgrundkärpfling Nothobranchius furzeri als neues Modell für die Alternsforschung
  Platzer M, Reichwald K, Hartmann N, Cellerino A, Englert C
  In: Interdisziplinäre geriatrische Versorgung (edited by Heiß W), Altersmedizin aktuell 2011, Kapitel 3.1.3, ecomed Medizin, L
  
• To be or not to be the odd one out--allele-specific transcription in pentaploid dogroses (Rosa L. sect. Caninae (DC.) Ser).
  Ritz CM, Köhnen I, Groth M, Theissen G, Wissemann V
  BMC Plant Biol 2011, 11, 37
  
• Association of TLR7 variants with AIDS-like disease and AIDS vaccine efficacy in rhesus macaques.
  Siddiqui RA, Krawczak M, Platzer M, Sauermann U
  PLoS One 2011, 6(10), e25474
  
• Allele-Specific, Age-Dependent and BMI-Associated DNA Methylation of Human MCHR1.
  Stepanow S, Reichwald K, Huse K, Gausmann U, Nebel A, Rosenstiel P, Wabitsch M, Fischer-Posovszky P, Platzer M
  PLoS One 2011, 6(5), e17711
  
• Comprehensive assessment of sequence variation within the copy number variable defensin cluster on 8p23 by target enriched in-depth 454 sequencing.
  Taudien S, Szafranski K, Felder M, Groth M, Huse K, Raffaelli F, Petzold A, Zhang X, Rosenstiel P, Hampe J, Schreiber S, Platzer M
  BMC Genomics 2011, 12(1), 243
  
• Sequencing of BAC pools by different next generation sequencing platforms and strategies.
  Taudien* S, Steuernagel* B, Ariyadasa R, Schulte D, Schmutzer T, Groth M, Felder M, Petzold A, Scholz U, Mayer KF, Stein N, Platzer M
  BMC Res Notes 2011, 4, 411 * equal contribution
  
• Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives.
  Wicker T, Mayer KF, Gundlach H, Martis M, Steuernagel B, Scholz U, Simková H, Kubaláková M, Choulet F, Taudien S, Platzer M, Feuillet C, Fahima T, Budak H, Dolezel J, Keller B, Stein N
  Plant Cell 2011, 23(5), 1706-18
  
• Origin of land plants: do conjugating green algae hold the key?
  Wodniok S, Brinkmann H, Glöckner G, Heidel AJ, Philippe H, Melkonian M, Becker B
  BMC Evol Biol 2011, 11, 104
  
• RNA sequencing reveals differential expression of mitochondrial and oxidation reduction genes in the long-lived naked mole-rat when compared to mice.
  Yu C, Li Y, Holmes A, Szafranski K, Faulkes CG, Coen CW, Buffenstein R, Platzer M, de Magalhães JP, Church GM
  PLoS One 2011, 6(11), e26729