Publications

2023

• Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision.
  Vromman M, Anckaert J, Bortoluzzi S, Buratin A, Chen CY, Chu Q, Chuang TJ, Dehghannasiri R, Dieterich C, Dong X, Flicek P, Gaffo E, Gu W, He C, Hoffmann S, Izuogu O, Jackson MS, Jakobi T, Lai EC, Nuytens J, Salzman J, Santibanez-Koref M, Stadler P, Thas O, Vanden Eynde E, Verniers K, Wen G, Westholm J, Yang L, Ye CY, Yigit N, Yuan GH, Zhang J, Zhao F, Vandesompele J, Volders PJ
  Nat Methods 2023, 20(8), 1159-69
  
• Signalling by senescent melanocytes hyperactivates hair growth.
  Wang X, Ramos R, Phan AQ, Yamaga K, Flesher JL, Jiang S, Oh JW, Jin S, Jahid S, Kuan CH, Nguyen TK, Liang HY, Shettigar NU, Hou R, Tran KH, Nguyen A, Vu KN, Phung JL, Ingal JP, Levitt KM, Cao X, Liu Y, Deng Z, Taguchi N, Scarfone VM, Wang G, Paolilli KN, Wang X, Guerrero-Juarez CF, Davis RT, Greenberg EN, Ruiz-Vega R, Vasudeva P, Murad R, Widyastuti LHP, Lee HL, McElwee KJ, Gadeau AP, Lawson DA, Andersen B, Mortazavi A, Yu Z, Nie Q, Kunisada T, Karin M, Tuckermann J, Esko JD, Ganesan AK, Li J, Plikus MV
  Nature 2023, 618(7966), 808-17
  
• A protocol for the use of cloud-based quantum computers for logical network analysis of biological systems.
  Weidner FM, Rossini M, Ankerhold J, Kestler HA
  STAR Protoc 2023, 4(3), 102438
  
• Leveraging quantum computing for dynamic analyses of logical networks in systems biology.
  Weidner FM, Schwab JD, Wölk S, Rupprecht F, Ikonomi N, Werle SD, Hoffmann S, Kühl M, Kestler HA
  PATTERNS 2023, 4(3), 100705
  
• Light and prey influence the abundances of two rhodopsins in the dinoflagellate Oxyrrhis marina.
  Westermann M, Hoischen C, Wöhlbrand L, Rabus R, Rhiel E
  Protoplasma 2023, 260(2), 529-44
  
• The neurological and non-neurological roles of the primary microcephaly-associated protein ASPM.
  Wu X, Li Z, Wang ZQ, Xu X
  Front Neurosci 2023, 17, 1242448
  
• Transcriptomes of aging brain, heart, muscle, and spleen from female and male African turquoise killifish.
  Xu A, Teefy BB, Lu RJ, Nozownik S, Tyers AM, Valenzano DR, Benayoun BA
  Sci Data 2023, 10(1), 695 published during change of institution
  
• Author Correction: Butler enables rapid cloud-based analysis of thousands of human genomes.
  Yakneen S, Waszak SM, PCAWG Technical Working Group, Gertz M, Korbel JO, PCAWG Consortium
  Nat Biotechnol 2023, 41(4), 577
  
• The TRRAP-HAT-Sp1 axis maintains brain homeostasis
  Yin B
  Dissertation 2023, Jena, Germany
  
• TRRAP-mediated acetylation on Sp1 regulates adult neurogenesis.
  Yin BK, Lázaro D, Wang ZQ
  Comput Struct Biotechnol J 2023, 21, 472